10 Resources

10.1 Orchestrating Single-Cell Analysis with Bioconductor

OSCA

10.2 scRNA-seq Protocols

• 10x Chromium
• Single Cell Genomics Library Structure
• SMART-seq2
• CELL-seq
• Drop-seq
• UMI
• STRT-Seq

10.3 External RNA Control Consortium (ERCC)

ERCCs

10.4 scRNA-seq analysis tools

Extensive list of software packages (and the people developing these methods) for single-cell data analysis:

• awesome-single-cell

Tallulah Andrews’ single cell processing scripts:

• scRNASeqPipeline

Various tools from 10x Genomics:

• Cell Ranger
• Space Ranger

10.5 scRNA-seq public datasets

• Hemberg group’s public datasets
• scRNAseq R package - 64 public datasets